PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008239751.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 186aa    MW: 20991.1 Da    PI: 9.4762
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008239751.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH322.2e-101567655
                    HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-..STCHHHHHHHHHHHHHHH CS
             HLH  6 nerErrRRdriNsafeeLrellPk.askapskK..lsKaeiLekAveYIksLq 55
                    + +Er+RR ++++  ++L +l+P+  sk+++ K  ls    L +A  YIk+L+
  XP_008239751.1 15 KTVERNRRIHMKDLCFKLASLIPPqHSKPSNSKdtLSQQNQLDLASSYIKQLR 67
                    679*********************77755555556****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.97E-5771No hitNo description
PROSITE profilePS5088810.556966IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-101384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-101383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-71566IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MKKCSGESSS KLDRKTVERN RRIHMKDLCF KLASLIPPQH SKPSNSKDTL SQQNQLDLAS  60
SYIKQLRERI ENLKERKEKA MRSQLGIDAN STIDADNAMT VRSRLPVIEL KDSGSVIEVM  120
LISGLNKNFM LYEVIGVLEE EGAEVISASF STVGDKVFHS LHAQVKISRV GVETSNVWQR  180
LQDLIY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4672381e-38AM467238.2 Vitis vinifera contig VV78X066099.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008239751.11e-135PREDICTED: uncharacterized protein LOC103338332 isoform X3
TrEMBLM5WEP81e-125M5WEP8_PRUPE; Uncharacterized protein
STRINGVIT_17s0000g08150.t012e-80(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.15e-32bHLH family protein